1.官网
https://annovar.openbioinformatics.org/en/latest/user-guide/startup/
都填英文 要不然会报错
tar -xzvf annovar.latest.tar.gztree
.
├── annotate_variation.pl
├── coding_change.pl
├── convert2annovar.pl
├── example
│ ├── ex1.avinput
│ ├── ex2.vcf
│ ├── example.simple_region
│ ├── example.tab_region
│ ├── gene_fullxref.txt
│ ├── gene_xref.txt
│ ├── grantham.matrix
│ ├── README
│ └── snplist.txt
├── humandb
│ ├── genometrax-sample-files-gff
│ │ ├── list
│ │ ├── sample_chip_featuretype_hg19.gff
│ │ ├── sample_common_snp_featuretype_hg19.gff
│ │ ├── sample_cosmic_featuretype_hg19.gff
│ │ ├── sample_cpg_islands_featuretype_hg19.gff
│ │ ├── sample_dbnsfp_featuretype_hg19.gff
│ │ ├── sample_disease_featuretype_hg19.gff
│ │ ├── sample_dnase_featuretype_hg19.gff
│ │ ├── sample_drug_featuretype_hg19.gff
│ │ ├── sample_evs_featuretype_hg19.gff
│ │ ├── sample_gwas_featuretype_hg19.gff
│ │ ├── sample_hgmd_common_snp_featuretype_hg19.gff
│ │ ├── sample_hgmd_disease_genes_featuretype_hg19.gff
│ │ ├── sample_hgmd_featuretype_hg19.gff
│ │ ├── sample_hgmdimputed_featuretype_hg19.gff
│ │ ├── sample_microsatellites_featuretype_hg19.gff
│ │ ├── sample_miRNA_featuretype_hg19.gff
│ │ ├── sample_omim_featuretype_hg19.gff
│ │ ├── sample_pathway_featuretype_hg19.gff
│ │ ├── sample_pgx_featuretype_hg19.gff
│ │ ├── sample_ptms_featuretype_hg19.gff
│ │ ├── sample_snps_dbsnp_featuretype_hg19.gff
│ │ ├── sample_snps_ensembl_featuretype_hg19.gff
│ │ ├── sample_transfac_sites_featuretype_hg19.gff
│ │ └── sample_tss_featuretype_hg19.gff
│ ├── GRCh37_MT_ensGeneMrna.fa
│ ├── GRCh37_MT_ensGene.txt
│ ├── hg19_example_db_generic.txt
│ ├── hg19_example_db_gff3.txt
│ ├── hg19_MT_ensGeneMrna.fa
│ ├── hg19_MT_ensGene.txt
│ ├── hg19_refGeneMrna.fa
│ ├── hg19_refGene.txt
│ ├── hg19_refGeneVersion.txt
│ ├── hg19_refGeneWithVerMrna.fa
│ └── hg19_refGeneWithVer.txt
├── retrieve_seq_from_fasta.pl
├── table_annovar.pl
└── variants_reduction.pl